PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009102668.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 374aa    MW: 41037.3 Da    PI: 9.9757
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009102668.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix582.5e-1819108272
        trihelix   2 WtkqevlaLiearremeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                     Wt +e+++Liea++ ++er  r++                    ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykk++e e++r 
  XP_009102668.1  19 WTLNETMVLIEAKKMDDERRMRRSiglpapeqsqdsrsssgnkPAELRWKWIEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVREYERGRL 108
                     **************666666665445556666666666777669999***************************************9974 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.7131194IPR017877Myb-like domain
PfamPF138378.3E-1418109No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MADQSGGLGL MREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPAPEQ SQDSRSSSGN  60
KPAELRWKWI EDYCWRKGCM RSQNQCNDKW DNLMRDYKKV REYERGRLES SFASGSSSSA  120
AAETGSYWKM EKSERKERNL PSNMLPQTYQ ALFNVVESKT HPSSTAATAI TAAVAAAAAE  180
TGSGNGSGGG LHIPKVIQQQ GLGFVPQHQM IQPPVLLPLP RPPPPPSQPL QPRPLLLPPP  240
PQPSFHAQPI LPTVDTSPAK RRRTMPTTAA GTSGGGGGGN AEMEEGESVV AAALSRSASV  300
IANAIRESEE RQDRRHKEVM SLKERRLKIE ETNVEMNREG MSGLVEAINK LANSMFALAS  360
STSRHNNQHQ GGPS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894440.0AC189444.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB070J23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102668.10.0PREDICTED: E1A-binding protein p400-like isoform X2
TrEMBLA0A078CNH80.0A0A078CNH8_BRANA; BnaA07g06920D protein
TrEMBLM4DEI50.0M4DEI5_BRARP; Uncharacterized protein
STRINGBra014906.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.11e-123Trihelix family protein